Publications

Journal Articles | Book Chapters | Books | Technical Reports, Book Reviews, etc.

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Journal Articles

| present-2011 | 2010-2006 | 2005-2001 | 2000-1996 | 1995-1991 | 1990-1981 | 1980-1970 |

present-2011

Oguz, C., Watson, L.T., Baumann, W. T., and Tyson, J. J. (2017). Predicting network modules of cell cycle regulators using relative protein abundance statistics. BMC Syst. Biol. 11:30
[Abstract][Article]
Barik, D., Ball, D. A., Peccoud, J. and Tyson, J. J. (2016). A stochastic model of the yeast cell cycle reveals roles for feedback regulation in limiting cell viability. PLoS Comput. Biol. 12:e1005230.
[Abstract][Article]
Battogtokh, D., and Tyson, J. J. (2016) A bistable switch mechanism for stem cell domain nucleation in the shoot apical meristem. Front. Plant Sci. 7:674.
[Abstract][Article]
Battogtokh, D., and Tyson, J. J. (2016). A bistable switch mechanism for stem cell domain nucleation in the shoot apical meristem. Front. Plant Sci. 7:674.
[Abstract][Article]
Gotoh, T., Kim, J. K., Liu, J., Vila-Caballer, M., Stauffer, P. E., Tyson, J. J. and Finkielstein, C. V. (2016) Model-driven experimental approach reveals the complex regulatory of p53 by the circadian factor Period 2. Proc. Natl. Acad. Sci. 113:13516-13521.
[Abstract][Article]
Laomettachit, T., Chen, K.C., Baumann, W.T., and Tyson, J.J. (2016). A model of yeast cell-cycle regulation based on a standard component modeling strategy for protein regulatory networks. PLoS One 11 (5): e0153738.
[Abstract][Article]
Laomettachit, T., Chen, K.C., Baumann, W.T., and Tyson, J.J. (2016). A model of yeast cell-cycle regulation based on a standard component modeling strategy for protein regulatory networks. PLoS One 11 (5): e0153738.
[Abstract][Article]
Li, F., Subramanian, K., Chen, M. Tyson, J. J. and Cao, Y. (2016). A stochastic spatiotemporal model of a response-reglator network in the Caulobacter crescentus life cycle. Phys. Biol. 13:035007.
[Abstract]
Zachariae, W., and Tyson, J. J. (2016) Cell division: flipping the mitotic switches. Curr. Biol. 26:R1272-R1274.
[Abstract][Article]
Adames, N.R., Schuck, P.L., Chen, K.C., Murali, T.M., Tyson, J.J., and Peccoud, J. (2015). Experimental testing of a new integrated model of the budding yeast Start transition. Mol. Biol. Cell 26:3966-3984.
[Abstract][Article]
Clarke, R., Tyson, J. J. and Dixon, J. M. (2015). Endocrine resistance in breast cancer--an overview and update. Mol. Cell. Endocrinol. 418 (03):220-234.
[Abstract][Article]
Gerard, C., Tyson, J.J., Coudreuse, D. and Novak, B. (2015). Cell cycle control by a minimal cdk network. PLoS Comput. Biol. 11:e1004056.
[Abstract][Article]
Hong, T., Oguz, C., and Tyson, J.J. (2015). A mathematical framework for understanding four-dimensional heterogeneous differentiation of CD4+ T cells. Bull. Math. Biol. 77 (6): 1046-1064.
[Abstract][Article]
Kraikivski, P., Chen, K.C., Laomettachit, T., Murali, T.M., and Tyson, J.J. (2015). From START to FINISH: computational analysis of cell cycle control in budding yeast. NPJ Syst. Biol. Appl. 1: 15016.
[Abstract][Article]
Palmisano, A., Hoops, S., Watson, L.T., Jones Jr., T.C., Tyson, J.J., and Shaffer, C.A. (2015). JigCell run manager (JC-RM): a tool for managing large sets of biochenical model parametrizations. BMC Syst. Biol. 9: 95.
[Abstract][Article]
Subramanian, K., Paul, M.R., and Tyson, J.J. (2015). A theoretical investigation of alternative models. PLoS Comput. Biol. 11: e1004348.
[Abstract][Article]
Tavassoly, I., Parmar, J.H., Shajahan-Haq, A.N., Clarke, R., Baumann, W.T., and Tyson, J.J. (2015). Dynamic modeling of the interaction between autophagy and apoptosis in mammalian cells. CPT Pharmacometrics Syst. Pharmacol. 4 (4): 263-272.
[Abstract][Article]
Tyson, J.J., and Novak, B. (2015). Models in biology: lessons from modeling regulation of the eukaryotic cell cycle. BMC Biol. 13: 46.
[Abstract][Article]
Chen, C., Baumann, W.T., Xing, J., Xu, L., Clarke, R., and Tyson, J.J. (2014). Mathematical models of the transitions between endocrine therapy response and resistant states in breast cancer. J Roy Soc Interface 11, 20140206.
[Abstract][Article]
Oguz, C., Palmisano, A., Laomettachit, T., Watson, L.T., Baumann, W.T., and Tyson, J.J. (2014). A stochastic model correctly predicts changes in budding yeast cell cycle dynamics upon periodic expression of CLN2. PLoS One 9(5):e96726.
[Abstract][Article]
Palmisano, A., Hoops, S., Watson, L.T., Jones, T.C., Jr., Tyson, J.J., and Shaffer, C.A. (2014). Multisite Model Builder (MSMB): a flexible editor for compact biochemical models. BMC Syst Biol 8:42 [Epub ahead of print].
[Abstract][Article]
Subramanian, K., Paul, M.R., and Tyson, J.J. (2014). De novo production of Turing activator generates polarity in pattern formation. Paper presented at: Advances in Systems and Synthetic Biology (Evry, France), pp. 131-142.
[Article]
Tyson, J.J., and Novak, B. (2014). Control of cell growth, division and death: information processing in living cells. Interface Focus 4, 20130070.
[Abstract][Article]
Tyson, J.J., and Novak, B. (2014). Bistability, oscillations, and travelling waves in frog egg extracts. Bull Math Biol Epub ahead of print.
[Abstract][Article]
Ball, D.A., Adames, N.R., Reischmann, N., Barik, D., Franck, C.T., Tyson, J.J., and Peccoud, J. (2013). Measurement and modeling of transcriptional noise in the cell cycle regulatory network. Cell Cycle 12: 3203-3218.
[Abstract][Article]
Chen, C., Baumann, W.T., Clarke, R., and Tyson, J.J. (2013). Modeling the estrogen receptor to growth factor receptor signaling switch in human breast cancer cells. FEBS Lett 587:3327-3334.
[Abstract][Article]
Gerald, C., Tyson, J.J., and Novak, B. (2013). Minimal models for cell cycle control based on competitive inhibition and multistate phosphorylations of Cdk substrates. Biophys J:104, 1367-1379.
[Abstract][Article]
Oguz, C., Teeraphan, L., Chen, K.C., Watson, L.T., Baumann, W.T., and Tyson, J.J. (2013). Optimization and model reduction in the high dimensional parameter space of a budding yeast cell cycle model. BMC Systems Biology 7:53.
[Abstract][Article]
Parmar, J.H., Cook, K.L., Shajahan, A.N., Clarke, P., Tavassoly, I., Clarke, R., Tyson, J.J., and Baumann, W.T. (2013). Modeling the effect of GRP78 on anti-estrogen sensitivity and resistance in breast cancer. Interface Focus 3:20130012.
[Abstract][Article]
Poirel, C.L., Rodrigues, R.R., Chen, K.C., Tyson, J.J., and Murali, T.M. (2013). Top-down network analysis to drive bottom-up modeling of physiological processes. J Comput Biol 20: 409-418.
[Abstract][Article]
Subramanian, K., Paul, M.R., and Tyson, J.J. (2013). Potential role of a bistable histidine kinase switch in the asymmetric division cycle of Caulobacter crescentus. PLoS Comput Biol 9:e1003221.
[Abstract][Article]
Verdugo, A., Vinod, P.K., Tyson, J.J., and Novak, B. (2013). Moleclar mechanisms creating bi-stable switches at cell cycle transitions. Open Biol 3: 120179.
[Abstract][Article]
Zhang, T., Tyson, J.J., and Novak, B. (2013). Role for regulated phosphatase activity in generating mitotic oscillations in Xenopus cell-free extracts. Proc Natl Acad Sci USA 110: 20539-20544.
[Abstract][Article]
Clarke. R., Cook, K.L., Hu, R., Facey, C.O., Tavassoly, I., Schwartz, J.L., Baumann, W.T., Tyson, J.J., Xuan, J., Wang, Y., Wärri, A., and Shajahan, A.N. (2012). Endoplastic reticulum stress, the unfolded protein response, autophagy and the integrated regulation of breast cancer cell fate. Cancer Res. 72:1321-1331.
[Abstract][Article]
Fu, Y., Glaros, T., Zhu, M., Wang, P., Wu, Z., Tyson, J.J., Li, L,, and Xing, J. (2102). Network topologies and dynamics leading to endotoxin tolerance and priming in innate immune cells. PLoS Comput. Biol. 8:e1002526.
[Abstract][Article]
Hancioglu, B., and Tyson, J. J. (2012). A mathematical model of mitotic exit in budding yeast: the role of Polo kinase. PLoS One 7:e30810.
[Abstract][Article]
Hong, T., Xing, J., Li, L., and Tyson, J.J. (2012). A simple theoretical framework for understanding heterogeneous differentiation of CD4+ T cells. BMC Syst. Biol. 6:66.
[Abstract][Article]
Liu, Z., Pu, Y., Li, F., Shaffer, C.A., Hoops, S., Tyson, J.J., and Cao, Y. (2012). Hybrid modeling and simulation of stochastic effects on progression through the eukaryotic cell cycle. J Chem Phys 136:034105.
[Abstract][Article]
Ball, D.A., Ahn, T.-H., Wang, P., Chen, K.C., Cao, Y., Tyson, J.J., Peccoud, J., and Baumann, W.T. (2011). Stochastic exit from mitosis in budding yeast: model predictions and experimental observations. Cell Cycle 10: 999-1009.
[Abstract]
Ball, D.A., Marehand, J., Poulet, M., Baumann, W.T., Chen, K.C., Tyson, J.J., and Peccoud, J. (2011). Oscillatory dynamics of cell cycle proteins in single yeast cells analyzed by imaging cytometry. PLoS ONE 5, e26272.
[Abstract][Article]
Clarke, R., Shajahan, A.N., Wang, Y., Tyson, J.J., Riggins, R.B., Weiner, L.M., Baumann, W.T., Xuan, J., Zhang, B., Facey, C.,Aiyer, H., Cook, K., Hickman, F. E.,Tavassoly, I., Verdugo, A., Chen, C., Zwart, A., Warri, A., and Hilakivi-Clarke, L. A. (2011). Endoplasmic reticulum stress, the unfolded protein response, and gene network modeling in antiestrogen resistant breast cancer. Hormone Mol. Biol. Clin. Invest 5: 35-44.
[Abstract]
He, E., Kapuy, O., Oliveira, R.A., Uhlmann, F., Tyson, J.J., and Novak, B. (2011). System -level feedbacks make the anaphase switch irreversible. Proc Natl Acad Sci U S A 108, May 26 [Eprint ahead of print]
[Abstract][Article]
Hong, T., Xing, J., Li, L., and Tyson, J.J. (2011). A mathematical model for the reciprocal differentiation of T helper 17 cells and induced regulatory T cells. PLoS Comput. Bio.l 7: e1002122.
[Abstract][Article]
Singhania, R., Sramkoski, R.M., Jacobberger, J.W., and Tyson, J.J. (2011). A hybrid model of mammalian cell cycle regulation. PLoS Comput Biol 7: e1001077.
[Abstract][Article]
Tyson, J.J., and Novak, B. (2011). Cell cycle: who turns the crank? Curr. Biol. 21:R185-187.
[Abstract][Article]
Tyson, J.J., Baumann, W.T., Chen, C., Verdugo, A., Tavassoly, I., Wang, Y., Weiner, L.M., and Clarke, R. (2011). Dynamic modelling of eostrogen signalling and cell fate in breast cancer cells. Nat. Rev. Cancer 11: 523-532.
[Abstract][Article]

Journal Articles | top

2010-2006

Barik, D., Baumann, W.T., Paul, M.R., Novak, B., and Tyson, J.J. (2010). A model of yeast cell cycle regulation based on multisite phosphorylation. Mol. Syst. Biol. 6:405.
[Abstract][Article]
Novak, B., Kapuy, O., Domingo-Sananes, M.R., and Tyson, J.J. (2010). Regulated protein kinases and phosphatases in cell cycle decisions. Curr. Opin. Cell Biol. 22:1-8.
[Abstract][Article]
Randhawa, R., Shaffer, C.A., and Tyson, J.J. (2008). Model composition for macromolecular regulatory networks. IEEE/ACM Trans. Comput. Biol. Bioinform.7:278-287.
[Abstract]
Tyson, J.J., and Novak, B. (2010). Functional motifs in biochemical reaction networks. Annu. Rev. Phys. Chem.. 61:219-240.
[Abstract][Article]
Csikasz-Nagy, A., Kapuy, O., Toth, A., Pal, C., Jensen, L.J., Uhlmann, F., Tyson, J.J., and Novak, B. (2009). Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation. Mol. Syst. Biol. 5:236.
[Abstract][Article]
Kapuy, O., Barik, D., Domingo Sananes, M.R., Tyson, J.J., and Novak, B. (2009). Bistability by multiple phosphorylation of regulatory proteins. Prog Biophys Mol Biol 100:47-56.
[Abstract][Article]
Kapuy, O., He, E., Lopez-Avilies, S., Uhlmann, F., Tyson, J.J., and Novak, B. (2009). System-level feedbacks control cell cycle progression FEBS Lett 583:3992-3998.
[Abstract][Article]
Kar, S., Baumann, W.T., Paul, M.R., and Tyson, J.J. (2009). Exploring the roles of noise in the eukaryotic cell cycle. Proc. Natl. Acad. Sci. USA 106:6471-6476.
[Abstract][Article]
Li, S., Brazhnik, P., Sobral, B., and Tyson, J.J. (2009). Temporal controls of the asymmetric cell division cycle in Caulobacter crescentus. PLoS Comput Biol 5: e1000463.
[Abstract][Article]
Randhawa, R., Shaffer, C.A., and Tyson, J.J. (2009). Model aggregation: a building-block approach to creating large macromolecular regulatory networks. Bioinformatics, 15:3289-3295.
[Abstract][Article]
Shaffer, C.A., Zwolak, J.W., Randhawa, R., and Tyson, J.J. (2009). Modeling molecular regulatory networks with JigCell and PET. Methods Mol. Biol. Syst. Biol. 500: 81-111.
[Abstract][Article]
Su, J., Zhang, T., Tyson, J.J., and Li, L. (2009). The interleukin-1 receptor associated kinase M selectively inhibits the alternative, instead of the classical NFkappaB pathway. J. Innate Immun. 1: 164-174.
[Abstract][Article]
Tyson, J.J. (2009). In their own words: interviews with cell cycle. John Tyson on his highly cited paper. Cell Cycle 8: 3261.
[Abstract][Article]
Zhang, T., Brazhnik, P., and Tyson, J.J. (2009). Computational analysis of dynamical responses to the intrinsic pathway of programmed cell death. Biophys J. 97: 415-432.
[Abstract][Article]
Zwolak, J.W., Adjerid, N., Bagci, E.Z., Tyson, J.J., and Sible, J.C. (2009). A quantitative model of the effect of unreplicated DNA on cell cycle progression in frog egg extracts. J. Theor. Biol. 260: 110-120.
[Abstract][Article]
Barik, D., Paul, M.R., Baumann, W.T., Cao, Y., and Tyson, J.J. (2008). Stochastic simulation of enzyme-catalyzed reactions with disparate time scales. Biophys. J. 95: 3563-3574.
[Abstract][Article]
Csikasz-Nagy, A., Gyorffy, B., Alt, W., Tyson, J.J., and Novak, B. (2008). Spatial controls for growth zone formation during the fission yeast cell cycle. Yeast 25:59-69.
[Abstract][Article]
Csikasz-Nagy, A., Novak, B., and Tyson, J.J. (2008). Reverse engineering models of cell cycle regulation. Adv. Exp. Med. Biol. 641:88-97.
[Abstract][Article]
Li, S., Brazhnik, P., Sorbal, B., and Tyson, J.J. (2008). A quantitative study of the division cycle of Caulobacter crescentus stalked cells. PLoS Comput. Biol 4:e9.
[Abstract][Article]
Novak, B., and Tyson, J.J. (2008). Design principles of biochemical oscillators. Nature Rev. Mol. Cell Biol. 9:981-991
[Abstract][Article]
Panning, T.D., Watson, L.T., Allen, N.A., Chen, K.C., Shaffer, C.A., and Tyson, J.J. (2008). Deterministic parallel global parameter estimation for a model of the budding yeast cell cycle. J Glob Optim 40:719-738.
[Abstract][Article]
Sabouri-Ghomi, M., Ciliberto, A., Kar, S., Novak, B., and Tyson, J.J. (2008). Antagonism and bistability in protein interaction networks. J Theor Biol. 250:209-218
[Abstract][Article]
Tyson, J.J., and Novak, B. (2008). Temporal organization of the cell cycle. Curr. Biol. 18: R759-R768.
[Abstract][Article]
Tyson, J.J., Albert, R., Goldbeter, A., Ruoff, P., and Sible, J.C. (2008). Biological switches and clocks. J. R. Soc. Interface Aug 6; 5 Suppl. 1, S1-S8.
[Abstract][Article]
Calzone, L., Thieffry, D., Tyson, J. J., and Novak, B. (2007). Dynamical modeling of syncytial mitotic cycles in Drosophila embryos. Mol. Syst. Biol. 3:131-141.
[Abstract][Article]
Ciliberto, A., Capuani, F., and Tyson, J. J. (2007). Modeling networks of coupled enzymatic reactions using the total quasi-steady state approximation. PLoS Comput Biol 3:e45.
[Abstract][Article]
Csikasz-Nagy, A., Kapuy, O., Gyorffy, B., Tyson, J. J., and Novak, B. (2007). Modeling the septation initiation network (SIN) in fission yeast cells. Curr. Genet. 51:245-255.
[Abstract][Article]
Hong, C. I., Conrad, E. D. and Tyson, J. J. (2007). A proposal for robust temperature compensation of circadian rhythms. Proc. Natl. Acad. Sci. U.S.A. 104:1195-1200.
[Abstract][Article]
Novak, B., Tyson, J. J., Gyorffy, B., and Csikasz-Nagy, A. (2007). Irreversible cell-cycle transitions are due to systems-level feedback. Nature Cell Biol 9:724-728.
[Abstract][Article]
Panning, T.D., Watson, L.T., Shaffer, C.A., and Tyson, J.J. (2007). A mathematical programming formulation for the budding yeast cell cycle. Simulation 8:497-514.
[Abstract][Article]
Sible, J. C. and Tyson, J. J. (2007). Mathematical modeling as a tool for investigating cell cycle control networks. Methods 41:238-247.
[Abstract][Article]
Tyson, J. J. (2007). Bringing cartoons to life. Nature 445:823.
[Abstract][Article]
Zhang, T., Brazhnik, P. and Tyson, J. J. (2007). Exploring mechanisms of the DNA-damage response: p53 pulses and their possible relevance to apoptosis. Cell Cycle 6:85-94.
[Abstract][Article]
Allen, N. A., Chen, K. C., Shaffer, C. A., Tyson, J. J. and Watson, L. T. (2006). Computer evaluation of network dynamics models with application to cell cycle control in budding yeast. IEE Proc Syst Biol (Stevenage) 153:13-21.
[Abstract]
Battogtokh, D. and Tyson, J. J. (2006) Periodic forcing of a mathematical model of the eukaryotic cell cycle. Phys. Rev. E Stat. Nonlin. Soft Matter Phys. 73:011910
[Abstract][Article]
Battogtokh, D., Aihara, K. and Tyson, J. J. (2006). Synchronization of eukaryotic cells by periodic forcing. Phys. Rev. Lett. 96:148102.
[Abstract][Article]
Brazhnik, P. and Tyson, J. J. (2006). Cell cycle control in bacteria and yeast: a case of convergent evolution? Cell Cycle 5:522-529.
[Abstract][Article]
Conrad, E. D. and Tyson, J. J. (2006). Modeling molecular interaction networks with nonlinear ordinary differential equations. In System Modeling in Cell Biology from Concepts to Nuts and Bolts, Z. Szallasi, J. Stelling, and V. Periwal, eds. (Cambridge, MA: MIT Press), pp. 97-123.
[Abstract]
Csikasz-Nagy, A., Battogtokh, D., Chen, K. C., Novak, B. and Tyson, J. J. (2006). Analysis of a generic model of eukaryotic cell cycle regulation. Biophys. J. 90:4361-4379.
[Abstract][Article]
Tyson, J.J. (2006). Another turn for p53. Mol. Syst. Biol. 2:2006.0032.
[Abstract][Article]
Vass, M. T., Shaffer, C. A., Ramakrishnan, N., Watson, L. T. and Tyson, J. J. (2006). The JigCell model builder: a spreadsheet interface for creating biomedical reaction network models. IEEE/ACM Trans Comput Biol Bioinform 3:155-164.
[Abstract][Article]

Journal Articles | top

2005-2001

Ciliberto, A., Novak, B. and Tyson, J. J. (2005). Steady states and oscillations in the p53/Mdm2 network. Cell Cycle 4:488-493.
[Abstract][Article]
Ciliberto, A., Lukacs, A., Toth, A.,Tyson, J. J. and Novak, B. (2005). Rewiring the exit from mitosis. Cell Cycle 4:1107-1112.
[Abstract][Article]
Novak, B., Chen, K.C. and Tyson, J.J. (2005). Systems biology of the yeast cell cycle engine. In Topics in Current Genetics, Vol. 13. Systems Biology: Definitions and Perspectives. L. Alberghina and H. V. Westerhoff eds. (Springer, Berlin /Heidelberg) pp. 305-324.
[Abstract]
Tyson, J. J. (2005). The coordination of cell growth and division-intentional or incidental? BioEssays 2:72-77.
[Abstract]
Zwolak, J.W., Tyson, J.J. and Watson, L.T. (2005). Parameter estimation for a mathematical model of the cell cycle in frog eggs. J. Comp. Biol. 12:48-63.
[Abstract][Article]
Zwolak, J. W., Tyson, J. J. and Watson, L. T. (2005). Globally optimized parameters for a model of mitotic control in frog egg extracts. IEE Syst Biol. (Stevenage) 152:81-92.
[Abstract]
Battogtokh, D. and Tyson, J. J. (2004). Bifurcation analysis of a model of the budding yeast cell cycle. Chaos 14:653-661.
[Abstract][Article]
Battogtokh, D. and Tyson, J. J. (2004). Turbulence near cyclic fold bifurcations in birhythmic media. Phys. Rev. E 70:026212.
[Abstract][Article]
Chen, K.C., Calzone, L., Csikasz-Nagy, A., Cross, F.R., Novak, B. and Tyson, J.J. (2004). Integrative analysis of cell cycle control in budding yeast. Mol. Biol. Cell 15:3841-3862.
[Abstract][Article]
Novak, B. and Tyson, J. J. (2004). A model for restriction point control of the mammalian cell cycle. J. Theor. Biol. 230:563-579.
[Abstract][Article]
Sveiczer, A., Tyson, J.J. and Novak, B. (2004). Modelling the fission yeast cell cycle. Brief. Funct. Genomics Proteomics 2:298-307.
[Abstract][Article]
Thornton, B. R., Chen, K.C., Cross, F.R., Tyson, J.J., and Toczyski, D.P. (2004). Cycling without the cyclosome: modeling a yeast strain lacking the APC. Cell Cycle 3: 629-633.
[Abstract][Article]
Tyson, J. J. (2004). A precarious balance. Curr. Biol. 14:R262-263.
[Abstract][Article]
Tyson, J.J. (2004). Monitoring p53's pulse. Nat. Genet. 36:113-114.
[Abstract][Article]
Vass, M. T., Allen, N. A., Shaffer, C. A., Ramakrishnan, N., Watson, L. T. and Tyson, J. J. (2004). The Jigcell model builder and run manager. Bioinformatics 20:3680-3681.
[Abstract][Article]
Allen, N.A., Calzone, L., Chen, K.C., Ciliberto, A., Ramakrishnan, N., Shaffer, C.A., Sible, J.C., Tyson, J.J., Vass, M.T., Watson, L.T. and Zwolak, J.W. (2003). Modeling regulatory networks at Virginia Tech. OMICS 7:285-299.
[Abstract][Article]
Ciliberto, A., Petrus, M.J., Tyson, J.J. and Sible, J.C. (2003). A kinetic model of the cyclin E/Cdk2 developmental timer in Xenopus laevis embryos. Biophys Chem. 104:573-89.
[Abstract][Article]
Novak, B. and Tyson, J.J. (2003). Modelling the controls of the eukaryotic cell cycle. Biochem. Soc. Trans. 31:1526-1529.
[Abstract][Article]
Sha, W., Moore, J., Chen, K., Lassaletta, A.D., Yi, C.-S., Tyson, J.J. and Sible, J.C. (2003). Hysteresis drives cell-cycle transitions in Xenopus laevis egg extracts. Proc. Natl. Acad. Sci. USA 100:975-980.
[Abstract][Article]
Tyson, J.J., Chen, K.C. and Novak, B. (2003). Sniffers, buzzers, toggles and blinkers: dynamics of regulatory and signaling pathways in the cell. Curr. Opin. Cell Biol. 15:221-231.
[Abstract][Article]
Fall, C.P., Marland, E.S., Wagner, J. M. and Tyson, J.J. (2002). Computational Cell Biology. (New York, Springer-Verlag).
[Abstract]
Novak, B., Sible, J.C.and Tyson, J.J. (2002). Checkpoints in the cell cycle. Encyclopedia of Life Sciences. London: Nature Publishing Group. http://www.els.net/   [doi:10.1038/npg.els.0001355], pp.1-8.
Novak, B., Pataki, Z., Ciliberto, A. and Tyson, J.J. (2001). Mathematical model of the cell division cycle of fission yeast. Chaos 11:277-286.
[Abstract][Article]
Sveiczer, A., Tyson, J.J. and Novak, B. (2001). A stochastic molecular model of the fission yeast cell cycle: role of the nucleocytoplasmic ratio in cycle time regulation. Biophys. Chem. 92:1-15.
[Abstract]
Tyson, J.J., Chen, K. and Novak, B. (2001). Network dynamics and cell physiology. Nat. Rev. Mol. Cell Biol. 2:908-916.
[Abstract][Article]
Tyson, J.J. and Novak, B. (2001). Regulation of the eukaryotic cell cycle: molecular antagonism, hysteresis and irreversible transitions. J. Theor. Biol. 210:249-263.
[Abstract][Article]

Journal Articles | top

2000-1996

Chen, K.C., Csikasz-Nagy, A., Gyorffy, B., Val, J., Novak, B. and Tyson, J.J. (2000). Kinetic analysis of a molecular model of the budding yeast cell cycle. Mol. Biol. Cell 11:369-391.
[Abstract][Article]
Ciliberto, A. and Tyson, J.J. (2000). Mathematical model for early development of the sea urchin embryo, Bull. Math. Biol. 62:37-59.
[Abstract]
Sveiczer, A., Csikasz-Nagy, A., Gyorffy, B., Tyson, J.J. and Novak, B. (2000). Modeling the fission yeast cell cycle: quantized cycle times in wee1-cdc25∆ mutant cells. Proc. Natl. Acad. Sci. USA 97:7865-7870.
[Abstract][Article]
Brazhnik, P., and Tyson, J.J. (1999). On traveling wave solutions of Fisher's equation in two spatial dimensions. SIAM J. Appl. Math. 60:371-391.
Brazhnik, P., and Tyson, J.J. (1999). Velocity-curvature dependence for chemical waves in the Belousov-Zhabotinsky reaction: theoretical explanation of experimental observations. Phys. Rev. E 59:3920-3925.
Novak, B., Toth, A., Csikasz-Nagy, A., Gyorffy, B., Tyson, J.J. and Nasmyth, K. (1999). Finishing the cell cycle. J. Theor. Biol. 199:223-233.
[Abstract][Article]
Tyson, J.J., Hong, C.I., Thron, C.D.and Novak, B. (1999). A simple model of circadian rhythms based on dimerization and proteolysis of PER and TIM. Biophys. J. 77:2411-2417.
[Abstract][Article]
Borisuk, M.T. and Tyson, J.J. (1998). Bifurcation analysis of a model of mitotic control in frog eggs. J. Theor. Biol. 195:69-85.
[Abstract][Article]
Marlovits, G., Tyson, C.J., Novak, B. and Tyson, J.J. (1998). Modeling M-phase control in Xenopus oocyte extracts: the surveillance mechanism for unreplicated DNA. Biophys. Chem. 72:169-184.
[Abstract][Article]
Novak, B., Csikasz-Nagy, A., Gyorffy, B., Chen, K. and Tyson, J.J. (1998). Mathematical model of the fission yeast cell cycle with checkpoint controls at the G1/S, G2/M and metaphase/anaphase transitions Biophys. Chem. 72:185-200.
[Abstract][Article]
Novak, B., Csikasz-Nagy, A., Gyorffy, B., Nasmyth, K.and Tyson, J J. (1998). Model scenarios for evolution of the eukaryotic cell cycle. Phil. Trans. R. Soc. Lond. B 353:2063-2076.
[Abstract][Article]
Brazhnik, P., and Tyson, J.J. (1997). Steady-state autowave patterns in a two-dimensional excitable medium with a band of different excitability. Physica D 102:300-312.
Hong, C. I. and Tyson, J. J. (1997). A proposal for temperature compensation of the circadian rhythm in Drosophila based on dimerization of the per protein. Chronobiol. Int. 14:521-529.
[Abstract]
Novak, B. and Tyson, J.J. (1997). Modeling the control of DNA replication in fission yeast. Proc. Natl. Acad. Sci. USA 94:9147-9152.
[Abstract][Article]
Brazhnik, P., and Tyson, J.J. (1996). Propagation of waves through a line of discontinuity in two-dimensional excitable media: refraction and reflection of autowaves. Phys. Rev. E 54:1958-1968.
Brazhnik, P., and Tyson, J.J. (1996). Nonspiral excitation waves beyond the eikonal approximation. Phys. Rev. E 54:4338-4346.
Henze, C., and Tyson, J.J. (1996). A cellular automaton model of three-dimensional excitable media. J. Chem. Soc. (UK) Faraday Trans. 92:2883-2895.
Tyson, J.J., Novak, B., Odell, G.M., Chen, K. and Thron, C.D. (1996). Chemical kinetic theory: understanding cell-cycle regulation. Trends Biochem. Sci. 21:89-96.
[Abstract][Article]

Journal Articles | top

1995-1991

Novak, B. and Tyson, J.J. (1995). Quantitative analysis of a molecular model of mitotic control in fission yeast. J. Theor. Biol. 173:283-305.
[Abstract][Article]
Novak, B. and Tyson, J.J. (1993). Numerical analysis of a comprehensive model of M-phase control in Xenopus oocyte extracts and intact embryos. J. Cell Sci. 106:1153-1168. Highlighted by News and Views, Nature, 9 June 1994, p. 437.
[Abstract][Article]
Novak, B. and Tyson, J.J. (1993). Modeling the cell division cycle: M-phase trigger, oscillations and size control. J. Theor. Biol. 165:101-134.
[Abstract]
Keener, J.P., and Tyson, J.J. (1992). The dynamics of scroll waves in excitable media. SIAM Rev. 34:1-39.
Weimar, J.R., Tyson, J.J., and Watson, L.T. (1992). Diffusion and wave propagation in cellular automaton models of excitable media. Physica D 55:309-327.
Weimar J.R., Tyson, J.J., and Watson, L.T. (1992). Third generation ccllular automaton for modeling excitable media. Physica D 55:328-339.
Gerhardt, M., Schuster, H., and Tyson, J.J. (1991). A cellular automaton model of excitable media. IV. Untwisted scroll rings. Physica D 50:189-206.
Keener, J.P., and Tyson, J.J. (1991). The dynamics of helical scroll waves in excitable media. Physica D 53:151-161.
Tyson, J.J. (1991). Modeling the cell division cycle: cdc2 and cyclin interactions.Proc. Natl. Acad. Sci. USA 88:7328-7332.
[Abstract][Article]
Tyson, J.J., and Strogatz, S.H. (1991). The differential geometry of scroll waves. Internatl. J. Bifur. Chaos 1:723-744.

Journal Articles | top

1990-1981

Gerhardt, M., Schuster, H., and Tyson, J.J. (1990). A cellular automaton model of excitable media including curvature and dispersion. Science 247:1563-1566.
Gerhardt, M., Schuster, H. and Tyson, J.J. (1990). A cellular automaton model of excitable media. II. curvature, dispersion, rotating waves and meandering waves. Physica D 46:392-415.
Gerhardt, M., Schuster, H., and Tyson, J.J. (1990). A cellular automaton model of excitable media. III. Fitting the Belousov-Zhabotinskii reaction. Physica D 46:416-426.
Keener, J.P., and Tyson, J.J. (1990). Helical and circular scroll wave filaments. Physica D 44:191-202.
Nagy-Ungvarai, Z., Tyson, J.J., Mueller, S.C., Watson, L.T., and Hess, B. (1990). Experimental study of spiral waves in the Cerium-catalyzed Belousov-Zhabotinskii reaction. J. Phys. Chem. 94:8677-8682.
Tyson, J.J., Chen, K.C., Lederman M., and Bates, R.C. (1990). Analysis of the kinetic hairpin transfer model for parvoviral DNA replication. J. Theor. Biol. 144:155-169.
[Abstract][Article]
Chen, K.C., Tyson, J.J., Lederman, M., Stout E.R., and Bates, R.C. (1989). A kinetic hairpin transfer model for parvoviral DNA replication. J. Molec. Biol. 208:283-296.
[Abstract][Article]
Nagy-Ungvarai, Z., Tyson, J.J., and Hess B. (1989). Experimental study of the chemical waves in the Ce-catalyzed Belousov-Zhabotinskii reaction. I. Velocity of trigger waves. J. Phys. Chem. 93:707-713.
Nagy-Ungvarai, Z., Mueller, S.C., Tyson, J.J., and Hess B. (1989). Experimental study of the chemical waves in the Ce-catalyzed Belousov-Zhabotinskii reaction. II. Concentration profiles. J. Phys. Chem. 93:2760-2764.
Tyson, J.J., Alexander, K.A., Manoranjan, V.S., and Murray, J.D. (1989). Spiral waves of cyclic AMP in a model of slime mold aggregation. Physica D 34:193-207.
Tyson, J.J., and Murray, J.D. (1989). Cyclic-AMP waves during aggregation of Dictyostelium amoebae. Development 106:421-426.
Tyson, J.J. (1989). Effects of asymmetric division on a stochastic model of the cell division cycle Math. Biosci. 96:165-184.
Dockery, J.D., Keener, J.P., and Tyson, J.J. (1988). Dispersion of traveling waves in the Belousov-Zhabotinskii reaction. Physica D 30:177-191.
Keener, J.P., and Tyson, J.J. (1988). The motion of untwisted untorted scroll waves in excitable media. Science 239:1284-1286.
Tyson, J.J., and Keener, J.P. (1988). Singular perturbation theory of traveling waves in excitable media (a review). Physica D 32:327-361. Identified as a "hot paper" by the Science Citation Index; see The Scientist, 22 January 1990, p. 15.
Alt, W., and Tyson, J.J. (1987). A stochastic model of cell division (with application to fission yeast). Math. Biosci. 84:159-18. Awarded the second Bellman Prize for the best paper published in Mathematical Biosciences in 1986 and 1987. Announced in Math. Biosci. 94:159-160 (1989).
Showalter, K., and Tyson, J.J. (1987). Luther's 1906 discovery and analysis of chemical waves. J. Chem. Educ. 64:742-744.
Tyson, J.J. (1987). Size control of cell division. J. Theor. Biol. 126:381-391.
Tyson, J.J., and Keener, J.P. (1987). Spiral waves in a model of myocardium. Physica D 29:215-222.
Tyson, J.J. (1987). Singular perturbation theory of target patterns in the Belousov-Zhabotinskii reaction. J. Chim. Physique 84:1359-1365.
Burger, C.J., Elgert, K.D., Tyson, J.J., and Birch, J.B. (1986). An improved data analysis method for interleukin 2 microassay. Comput. Biol. Med. 16:377-390.
Keener, J.P., and Tyson, J.J. (1986). Spiral waves in the Belousov-Zhabotinskii reaction. Physica D. 21:307-324.
Tyson, J.J., and Hannsgen, K.B. (1986). Cell growth and division: a deterministic/probabilistic model of the cell cycle. J. Math. Biol. 23:231-246.
Tyson, J.J., and Diekmann, O. (1986). Sloppy size control of the cell division cycle. J. Theor. Biol. 118:405-426.
Tyson, J.J., and Haralick, R.H. (1986). Computer analysis of two-dimensional gels by a general image processing system. Electrophoresis 7:107-113.
Hannsgen, K.B., Tyson, J.J., and Watson, L.T. (1985). Steady-state size distributions in probabilistic models of the cell division cycle. SIAM J. Appl. Math. 45:523-540.
Hannsgen, K.B., and Tyson, J.J., (1985). Stability of the steady-state size distribution in a model of cell growth and division. J. Math. Biol. 22:293-301.
Pahlic, M., and Tyson, J.J. (1985). Analysis of Physarum proteins throughout the cell cycle by two-dimensional polyacrylamide gel electrophoresis. Exp. Cell Res. 161:533-540.
Tyson, J.J., and Hannsgen, K.B. (1985). The distributions of cell size and generation time in a model of the cell cycle incorporating size control and random transitions. J. Theor. Biol. 113:29-62.
Tyson, J.J. (1985). The coordination of cell growth and division -- intentional or incidental? BioEssays 2:72-77.
Tyson, J.J., and Hannsgen, K.B. (1985). Global asymptotic stability of the size distribution in probabilistic models of the cell cycle. J. Math. Biol. 22:61-68.
Garcia-Herdugo, G., and Tyson, J.J. (1984). Induction of polyploid nuclei in Physarum polycephalum by cycloheximide treatment in prophase. Exp. Cell Res. 153:570-573.
Tyson, J.J. (1984). Relaxation oscillations in the revised oregonator. J. Chem. Phys. 80:6079-6082.
Tyson, J.J. (1984). Evolution of eusociality in diploid species. Theor. Pop. Biol. 26:283-295.
Pahlic, M., and Tyson, J.J. (1983). Identification and changes in activity of five thymidine kinase forms during the cell cycle of Physarum polycephalum. Exp. Cell Res. 144:159-164.
Pahlic, M., and Tyson, J.J. (1983). A cell cycle-dependent protein of Physarum polycephalum revealed by two-dimensional gel electrophoresis. Biochem. J. 212:245-247.
Tyson, J.J. (1983). Unstable activator models for size control of the cell cycle. J. Theor. Biol. 104:617-631.
[Abstract]
Tyson, J.J. (1983). Periodic enzyme synthesis and oscillatory repression: why is the period of oscillation close to the cell cycle time? J. Theor. Biol. 103:313-328.
Tyson, J.J. (1983). Unstable activator models for size control of the cell cycle. J. Theor. Biol. 104:617-631
Tyson, J.J. (1982). Scaling and reducing the Field-Koros-Noyes mechanism of the Belousov-Zhabotinskii reaction. J. Phys. Chem. 86:3006-3012.

Journal Articles | top

1980-1970

Tyson, J.J. (1980). Comment on 'Stable limit cycles in a two-component bimolecular reaction system'. J. Chem. Phys. 72:2898-2899.
Tyson, J.J., and Fife, P.C. (1980). Target patterns in a realistic model of the Belousov-Zhabotinskii reaction. J. Chem. Phys.73:2224-2237.
Tyson, J.J. (1979). Oscillations, bistability and echo waves in models of the Belousov-Zhabotinskii reaction. Ann. N.Y. Acad. Sci. 316:279-295.
Tyson, J.J., Garcia-Herdugo, G., and W. Sachsenmaier, W. (1979). Control of nuclear division in Physarum polycephalum: comparison of cycloheximide pulse treatment, UV irradiation, and heat shock. Exp. Cell Res. 119:87-98.
Tyson, J.J., and Sachsenmaier, W. (1979). Derepression as a model for control of the DNA-division cycle in eukaryotes. J. Theor. Biol. 79:275-280.
Tyson, J.J. (1979). Periodic enzyme synthesis: reconsideration of the theory of oscillatory repression. J. Theor. Biol. 80:27-38.
Tyson, J.J. (1978). On the appearance of chaos in a model of the Belousov reaction. J. Math. Biol. 5:351-362.
Tyson, J.J., and Sachsenmaier, W. (1978). Is nuclear division in Physarum controlled by a continuous limit cycle oscillator? J. Theor. Biol. 73:723-738.
Tyson, J.J. (1977). Analytic representation of oscillations, excitability and traveling waves in a realistic model of the Belousov-Zhabotinskii reaction. J. Chem. Phys. 66:905-915.
Tyson, J.J. (1977). Analytic representation of oscillations, excitability and traveling waves in a realistic model of the Belousov-Zhabotinskii reaction. J. Chem. Phys. 66:905-915.
Tyson, J.J. (1977). Multiple stationary states in the oregonator. J. Chem. Phys. 67:4297-4298.
Tyson, J.J. (1975). Classification of instabilities in chemical Reaction Systems. J. Chem. Phys. 62:1010-1015.
Tyson, J.J., and Kauffman, S. (1975). Control of mitosis by a continuous biochemical oscillator: synchronization and spatially inhomogeneous oscillations. J. Math. Biol.1:289-310.
Tyson, J.J. (1975). On the existence of oscillatory solutions in negative feedback cellular control processes. J. Math. Biol.1:311-315.
Tyson, J.J. (1975). On the existence of oscillatory solutions in negative feedback cellular control processes. J. Math. Biol.1:311-315.
Tyson, J.J. (1973). Some further studies of nonlinear oscillations in chemical systems. J. Chem. Phys. 58:3919-3930.
Tyson, J.J., Saxon, R.P., and Light, J.C. (1973). Semiclassical studies of planar reactive H + H2. J. Chem. Phys. 59:363-368.
Tyson, J.J., and Light, J.C. (1973). Properties of two component bimolecular and trimolecular chemical reaction systems. J. Chem. Phys. 59:4164-4173.
Tyson, J., Claassen, H.H., and Kim, H.Y. (1971). Molecular potential functions expressed in cartesian coordinates: application to the orbital valency force field. J. Chem. Phys. 54:3142-3156.
Selig, H., Holloway, J.H., Tyson, J.J., and Claassen, H.H. (1970). Raman spectra of AsF5 and VF5 and force constants of PF5, AsF5 and VF5. J. Chem. Phys. 53:2559-2564.

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Book Chapters

| present-1990 | 1989-1980 | 1979-1974 |

present-1990

Tyson, J.J., and Novak, B., eds. (2012). Irreversible transitions, bistability and checkpoint controls in the eukaryotic cell cycle: a systems-level understanding (San Diego, CA, Elsevier).
[Article]
Tyson, J.J., Borisuk, M.T., Chen, K., and Novak, B. (2000). Analysis of complex dynamics in cell cycle regulation, in Computational Modeling of Genetic and Biochemical Networks, (J.M. Bower, and H. Bolouri,Eds), pp. 287-305 (Cambridge, MA, MIT Press).
[Abstract]
Tyson, J.J., Chen, K.C. and Novak, B. (1997). The eukaryotic cell cycle: molecules, mechanisms and mathematical models, in Case Studies in Mathematical Modeling: Ecology, Physiology and Cell Biology. (H. G. Othmer, F. R. Adler, M. A. Lewis and J. C. Dallon Eds.) pp. 127-147 (Prentice Hall, Upper Saddle River).
[Abstract]
Val, J., and Tyson, J.J. (1997). A purely deterministic model for the population dynamics of budding yeast, in Advances in Mathematical Population Dynamics: Molecules, Cells and Man (O. Arino, D. Axelrod & M. Kimmel, Eds.) pp. (World Scientific, Singapore).
Novak, B. and Tyson, J.J. (1995). Mathematical modeling of the cell division cycle," in Mathematical Population Dynamics: Analysis of Heterogeneity (O. Arino, D. Axelrod & M. Kimmel, Eds.) Vol. 2, pp. 155-169 (Wuerz Publ., Winnipeg).
Tyson, J. J., Novak, B., Chen, K. and Val, J. (1995). Checkpoints in the cell cycle from a modeler's perspective. Prog. Cell Cycle Res.1:1-8.
[Abstract]
Tyson, J.J. and Keener, J.P. (1995). A theory of rotating scroll waves in excitable media, in Chemical Waves and Patterns (R. Kapral & K. Showalter, Eds.) pp. 93-118 (Kluwer, Dordrecht).
Tyson, J.J. (1994). What everyone should know about the Belousov-Zhabotinsky reaction, in Lecture Notes in Biomathematics (S.A. Levin, Ed.) Vol. 100, pp. 569-587 (Springer-Verlag, New York).
Weimar, J.R., Tyson, J.J., and Watson, L.T. (1992). Third generation cellular automaton for modeling excitable media, in Parallel Processing for Scientific Computing (J. Dongarra, K. Kennedy, P. Messina, D.C. Sorensen & R.G. Voigt, Eds.) pp. 376-381 (SIAM, Phila. PA).
Weimar, J.R., Watson, L.T. and Tyson, J.J. (1991). Cellular automaton models for reaction-diffusion equations, in Proceedings of the Sixth Distributed Memory Computing Conference (Q. Stout & M. Wolfe, Eds.) pp. 431-434 (IEEE Computer Soc., Los Alamitos CA).

Book Chapters | top

1989-1980

Tyson, J.J. (1989). Traveling waves in excitable media, in Ordinary and Partial Differential Equations, Volume II (B.D. Sleeman & R.J. Jarvis, Eds.) pp. 218-227 (Longman Scientific & Technical, Harlow UK).
Tyson, J.J. (1989). Cyclic AMP waves in Dictyostelium: specific models and general theories, in Cell to Cell Signalling: From Experiments to Theoretical Models (A. Goldbeter, Ed.) pp. 521-537 (Academic Press, London).
Tyson, J.J. and Kagan, M.L. (1988). Spatiotemporal organization in biological and chemical systems," in From Chemical to Biological Organization (M. Markus, S.C. M&udi.ller & G. Nicolis, Eds.) pp. 14-21 (Springer-Verlag, Berlin).
Tyson, J.J. (1988). Spiral waves in the Belousov-Zhabotinskii reaction, in Structure, Coherence and Chaos (P.L. Christiansen & R.D. Parmentier, Eds.) pp. 457-463 (Manchester Univ. Press).
Laffler, T.G., and Tyson, J.J. (1986). The Physarum cell cycle, in The Molecular Biology of Physarum polycephalum (W.F. Dove, Ed.) pp. 79-109 (Plenum, New York).
Tyson, J.J. (1985). A quantitative account of oscillations, bistability and traveling waves in the Belousov-Zhabotinskii reaction," in Oscillations and Traveling Waves in Chemical Systems (R.J. Field & M. Burger, Eds.) pp. 93-144 (Wiley Interscience, New York).
Tyson, J.J. (1985). The coordination of cell growth and division: a comparison of models, in Temporal Order (L. Rensing & N.I. Jaeger, Eds.) pp. 291-295 (Springer-Verlag, Berlin).
Painter, P.R., and Tyson, J.J. (1984). Periodic enzyme synthesis and the cell division cycle, in Cell Cycle Clocks (L.N. Edmunds, Ed.) pp. 173-192 (Marcel Dekker, New York).
Tyson, J.J., and Sachsenmaier, W. (1984). The control of nuclear division in Physarum polycephalum , in Cell Cycle Clocks (L.N. Edmunds, Ed.) pp. 253-270 (Marcel Dekker, New York).
Tyson, J.J. (1984). Control of nuclear division in Physarum polycephalum, in The Microbial Cell Cycle (P. Nurse & E. Streiblova, Eds.) pp. 175-190 (CRC Press, Boca Raton, FL).
Tyson, J.J., and Manoranjan, V.S. (1984). The speed of propagation of oxidizing and reducing wave fronts in the Belousov-Zhabotinskii reaction, in Non-Equilibrium Dynamics in Chemical Systems (C. Vidal & A. Pacault, Eds.) pp. 89-93 (Springer-Verlag, Berlin).
Evans, T.E., Daniel, J.W., Evans, H.H., Matthews, H.R., Mohberg, J.M., and Tyson, J.J. (1982). Annotated cell cycle," in Cell Biology of Physarum and Didymium, Vol. II (H.C. Aldrich & J.W. Daniel, Eds.) pp. 351-360 (Academic Press, New York).
Tyson, J. J. (1982). Periodic phenomena in Physarum, in Cell Biology of Physarum and Didymium, Vol. I (H.C. Aldrich & J.W. Daniel, Eds.) pp. 61-110 (Academic Press, New York).
Tyson, J.J. (1981). Nonlinear analysis of simple metabolic control circuits, in Bifurcation Theory: Applications of Nonlinear Analysis in the Physical Sciences (H. Amann, N. Bazley & K. Kirchgassner, Eds.) pp. 310-322 (Pitman, London).
Tyson, J. J. and Hannsgen, K. B. (1981). Analysis of a Deterministic/Probabilistic Model of the Cell Division Cycle, in Biomathematics and Cell Kinetics (M. Rotenberg, Ed.) pp. 167-176 (Elsevier/North Holland, Amsterdam).
Tyson, J. J.. (1981). On Scaling the oregonator equations, in Non-Linear Phenomena in Chemical Dynamics (C. Vidal & A. Pacault, Eds.) pp. 222-227 (Springer-Verlag, Berlin).

Book Chapters | top

1979-1974

Tyson, J. J. and Othmer, H. G. (1978). The dynamics of feedback control circuits in biochemical pathways, in Progress in Theoretical Biology (R. Rosen & F.M. Snell, Eds.) Vol. 5, pp. 1-62 (Academic Press, New York).
Tyson, J. J. et al. (1976). Group report: mathematical background, in The Molecular Basis of Circadian Rhythms (J.W. Hastings & H-G. Schweiger, Eds.) Life Sciences Research Report 1, pp. 85-108 (Dahlem Konferenzen, Berlin).
Tyson, J. J. (1974). Competition, selection and evolution in chemical networks, in Lectures in Mathematics in the Life Sciences (S.A. Levin, Ed.) Vol. 7, pp. 43-67 (Amer. Math. Soc., Providence RI).

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Books

Tyson, J. J. (1976). The Belousov-Zhabotinskii Reaction, Lecture Notes in Biomathematics, Vol. 10, 128 p. (Springer-Verlag, Berlin).

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Other

Tyson, J.J. (1996). About time. A review of A. Goldbeter's Biochemical Oscillations and Cellular Rhythms: The Molecular Bases of Periodic and Chaotic Behaviour, in Nature 380:213-214.
Segel, L., and Tyson, J.J. (1992). Law of mass action. A letter to the editor of Nature 357:106.
Tyson, J.J. (1992). Unpredictable reactions. A review of S.K. Scott's Chemical Chaos, in Nature 356:394-395.
Tyson, J.J. (1990). Biological clocks and heartbreaking failures. A review of A.T. Winfree's When Time Breaks Down, in Physics Today 41:107-109 (1988). A longer review also appears in Bull. Math. Biol. 52:591-596 (1990).
Tyson, J.J., Schuster, H., and Gerhardt, M. (1990). A review of V.S. Zykov's Simulation of Wave Processes in Excitable Media, in Bull. Math. Biol. 52:697-708.
Tyson, J.J. (1989). A review of D. Beach, C. Basilico and J. Newport's Cell Cycle Control in Eukaryotes, in Bull. Math. Biol. 51:649-651.
Tyson, J.J. (1988). A review of A.T. Winfree's The Timing of Biological Clocks, in Quart. Rev. Biol. 63:450.
Arnold, R., Showalter, K., and Tyson, J.J. (1987). A translation of R. Luther's "Propagation of chemical reactions in space," J. Chem. Educ. 64:740-742.
Tyson, J. J. (1987). Pattern and rhythm, a review of A. Babloyantz' Molecules, Dynamics & Life: An Introduction to the Self-Organization of Matter, in Nature 327:290.
Tyson, J.J. (1987). A review of N.F. Britton's Reaction-Diffusion Equations and Their Applications to Biology, in Bull. Math. Biol. 49:764-765.
Tyson, J. J. (1986). Steady-state solutions of plasmid replication equations, Appendix to Bremer & Lin-Chao J. Theor. Biol. 123:453-470.
Fife, P.C., and Tyson, J.J. (1980). Propagating waves and target patterns in chemical systems. University of Wisconsin Mathematics Research Center Technical Summary Report No. 2074. May.